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microbiome analysis pipeline  (Innov X Systems)

 
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    Innov X Systems microbiome analysis pipeline
    Microbiome Analysis Pipeline, supplied by Innov X Systems, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microbiome+analysis+pipeline/microbiome+analysis+pipeline/10__1515_slash_iss___2019___2002-490-32-21
    Average 90 stars, based on 1 article reviews
    microbiome analysis pipeline - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Abstracts DGCH
    Article Snippet: Unauthenticated Download Date | 4/20/19 8:49 AM Abstracts – DGCH Annual Congress 2019 – Munich, March 26–29 • DOI 10.1515/iss-2019-2002 s238 Innov Surg Sci 2019; 4, (Suppl 1): s206–s307 Establishment of a microbiome analysis pipeline from feces, scrapings and fresh-frozen mucosa for in-depth analysis of biobank tissue samples (Abstract ID: 343) U. Wirth1, D. Garzetti2, M. Koeppel2, D. Ring2, J. Werner1, B. Stecher2, M. Rentsch3, T. Schiergens1 1Uniklinik München 2Max von Pettenkoferinstitut für Hygiene und Medizinische Mikrobiologie der LMU München 3Klinik für AVT, München



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    Principal component analysis biplot (a) microbial community. The results show the mean relative abundances of microbial communities classified at the genus level, for the top 25 genera, from 16S rRNA amplicon sequencing (b) for environmental marine sediment, Day 0, and Day 28 planktonic samples, AR and P biofilm samples after exposure to anaerobic MB media for 28 days.

    Journal: Environmental Microbiology

    Article Title: Effects of Sulphate‐Reducing Bacteria Mixed‐Species Biofilms on Microbiologically Influenced Corrosion

    doi: 10.1111/1462-2920.70116

    Figure Lengend Snippet: Principal component analysis biplot (a) microbial community. The results show the mean relative abundances of microbial communities classified at the genus level, for the top 25 genera, from 16S rRNA amplicon sequencing (b) for environmental marine sediment, Day 0, and Day 28 planktonic samples, AR and P biofilm samples after exposure to anaerobic MB media for 28 days.

    Article Snippet: The microbiome analysis pipeline, along with DNA extraction, was performed by Eurofins Genomics LLC.

    Techniques: Amplification, Sequencing

    Correlation analysis between the root microbiome and metabolome at the late storage time point reveals a distinct pattern in the two highly resistant genotypes vs. the susceptible genotype. ( A ) Susceptible genotype (Sus_Ck); ( B ) resistant genotype, KSG4; and ( C ) resistant genotype, KSG6. Data are mean ± standard error of 4 replicates (each replicate consists of samples obtained from two roots). An ‘X’ sign inside the rectangular boxes in the heatmap indicates p < 0.05.

    Journal: International Journal of Molecular Sciences

    Article Title: Root Microbiome and Metabolome Traits Associated with Improved Post-Harvest Root Storage for Sugar Beet Breeding Lines Under Southern Idaho Conditions

    doi: 10.3390/ijms252312681

    Figure Lengend Snippet: Correlation analysis between the root microbiome and metabolome at the late storage time point reveals a distinct pattern in the two highly resistant genotypes vs. the susceptible genotype. ( A ) Susceptible genotype (Sus_Ck); ( B ) resistant genotype, KSG4; and ( C ) resistant genotype, KSG6. Data are mean ± standard error of 4 replicates (each replicate consists of samples obtained from two roots). An ‘X’ sign inside the rectangular boxes in the heatmap indicates p < 0.05.

    Article Snippet: The metagenomic reads obtained from the 16S sequencing were processed using the microbiome data analysis pipeline from LC Sciences (Houston, TX, USA).

    Techniques: